Estimation and Validation of Groundwater Storage Anomalies in the Kwale Aquifer, Kenya
A Case Study on the Applicability of GRACE and GLDAS for Monitoring Groundwater Temporal Variability in Small Coastal Aquifers of Data-Scarce Regions
Corresponding author: Maman Moustapha Habiboulaye
Abstract
Monitoring groundwater variability is essential for sustainable water resource management, particularly in regions with limited in-situ observations. This study evaluated the temporal consistency between Gravity Recovery and Climate Experiment (GRACE) derived Groundwater Storage Anomalies (GWSA) and in-situ measured borehole water levels in Kwale County, Kenya. Monthly GRACE Mascon data (CSR RL06.03) and borehole records (January 2007–December 2023) were standardized to z-scores to remove unit and baseline differences, enabling direct pattern-based comparisons. Pattern agreement was quantified using Pearson's correlation, Spearman's rank correlation, Nash–Sutcliffe Efficiency (NSE), and cross-correlation analysis. The results indicate a statistically significant and moderately strong linear relationship between GRACE and borehole anomalies (r = 0.578, p < 0.001), and a weak but significant monotonic association (ρ = 0.327, p = 0.0033). The positive NSE (0.156) demonstrates that GRACE is capable of capturing month-to-month variability in borehole water levels. Cross-correlation analysis identified the highest correlation at lag 0 months, showing that GRACE and borehole water level records respond concurrently to hydrological changes. The findings confirm that GRACE is capable of reproducing local groundwater variability patterns in Kwale County despite differences in the measurement scale and potential noise in borehole data. The demonstrated agreement supports the application of GRACE as a complementary groundwater monitoring tool in data-scarce regions, thus contributing to improved groundwater resource assessment, management, and protection.
Keywords:
borehole, GRACE, groundwater, GLDAS, satelliteDownloads
References
L. Wang, C. Chen, X. Ma, Z. Fu, Y. Zheng, and Z. Peng, "Evaluation of GRACE Mascon Solutions Using in-situ Geodetic Data: The Case of Hydrologic-induced Crust Displacement in the Yangtze River Basin," Science of The Total Environment, vol. 707, Mar. 2020, Art. no. 135606. DOI: https://doi.org/10.1016/j.scitotenv.2019.135606
F. Alshehri and A. Mohamed, "Analysis of Groundwater Storage Fluctuations Using GRACE and Remote Sensing Data in Wadi As-Sirhan, Northern Saudi Arabia," Water, vol. 15, no. 2, Jan. 2023, Art. no. 282. DOI: https://doi.org/10.3390/w15020282
E. Nkiaka, R. G. Bryant, M. Okumah, and F. F. Gomo, "Water Security in Sub‐Saharan Africa: Understanding the Status of Sustainable Development Goal 6," WIREs Water, vol. 8, no. 6, Nov. 2021, Art. no. e1552. DOI: https://doi.org/10.1002/wat2.1552
J. Nanteza, C. R. De Linage, B. F. Thomas, and J. S. Famiglietti, "Monitoring Groundwater Storage Changes in Complex Basement Aquifers: An Evaluation of the Grace Satellites Over East Africa," Water Resources Research, vol. 52, no. 12, pp. 9542–9564, Dec. 2016. DOI: https://doi.org/10.1002/2016WR018846
M. Rodell, J. Chen, H. Kato, J. S. Famiglietti, J. Nigro, and C. R. Wilson, "Estimating Groundwater Storage Changes in the Mississippi River Basin (USA) using GRACE," Hydrogeology Journal, vol. 15, no. 1, pp. 159–166, Jan. 2007. DOI: https://doi.org/10.1007/s10040-006-0103-7
R. A. Ramadan and S. Boubaker, "Predictive Modeling of Groundwater Recharge under Climate Change Scenarios in the Northern Area of Saudi Arabia," Engineering, Technology & Applied Science Research, vol. 14, no. 2, pp. 13578–13583, Apr. 2024. DOI: https://doi.org/10.48084/etasr.7020
T. D. Bhaga, T. Dube, M. D. Shekede, and C. Shoko, "Impacts of Climate Variability and Drought on Surface Water Resources in Sub-Saharan Africa Using Remote Sensing: A Review," Remote Sensing, vol. 12, no. 24, Dec. 2020, Art. no. 4184. DOI: https://doi.org/10.3390/rs12244184
N. Ferrer et al., "How Does Water-reliant Industry Affect Groundwater Systems in Coastal Kenya?," Science of The Total Environment, vol. 694, Dec. 2019, Art. no. 133634. DOI: https://doi.org/10.1016/j.scitotenv.2019.133634
B. D. Vishwakarma, "Monitoring Droughts from GRACE," Frontiers in Environmental Science, vol. 8, Dec. 2020, Art. no. 584690. DOI: https://doi.org/10.3389/fenvs.2020.584690
J. K. Dharpure, I. M. Howat, and S. Kaushik, "Declining Groundwater Storage in the Indus Basin Revealed Using GRACE and GRACE‐FO Data," Water Resources Research, vol. 61, no. 2, Feb. 2025, Art. no. e2024WR038279. DOI: https://doi.org/10.1029/2024WR038279
Y. Zhong et al., "Reinterpreting Global GRACE Trends Based on Century‐Long GRACE‐REC Data," Water Resources Research, vol. 59, no. 12, Dec. 2023, Art. no. e2023WR035817. DOI: https://doi.org/10.1029/2023WR035817
M. Groen, H. Rolf, C. Rutto, and M. Lane, "Geophysics Kwale," Technical Report II, SamsWater, Phoenix, AZ, USA, Mar. 2019.
C. Beatrice, "Assessment of the Potential for Managed Groundwater Recharge as a Mitigation to Saline Water Intrusion - Case Study of Coastal Aquifers, Kwale County, Kenya," Master of Science Thesis, University of Nairobi, Nairobi, Kenya, 2024.
N. F. Ramos et al., "Evidence of groundwater vulnerability to climate variability and economic growth in coastal Kenya," Journal of Hydrology, vol. 586, July 2020, Art. no. 124920. DOI: https://doi.org/10.1016/j.jhydrol.2020.124920
N. Ferrer Ramos and A. Folch Sancho, "Assessment of a Groundwater System Under Global Change Scenarios: The Case of Kwale (Kenya)," Ph.D thesis, Universitat Politècnica de Catalunya, 2019.
J. W. Kilwake, "Assessment of Water Quality in Boreholes and Wells in Waa Location, Kwale County- Kenya," Master's thesis, Pwani University, Kilifi, Kenya, 2016.
M. P. Schlegelmilch, A. Lakhani, L. D. Saunders, and G. S. Jhangri, "Evaluation of Water, Sanitation and Hygiene Program Outcomes Shows Knowledge-behavior Gaps in Coast Province, Kenya," Pan African Medical Journal, vol. 23, 2016. DOI: https://doi.org/10.11604/pamj.2016.23.145.7546
N. Ferrer, A. Folch, M. Lane, D. Olago, J. Odida, and E. Custodio, "Groundwater Hydrodynamics of an Eastern Africa Coastal Aquifer, Including La Niña 2016–17 Drought," Science of The Total Environment, vol. 661, pp. 575–597, Apr. 2019. DOI: https://doi.org/10.1016/j.scitotenv.2019.01.198
B. D. Loomis, S. B. Luthcke, and T. J. Sabaka, "Regularization and Error Characterization of GRACE Mascons," Journal of Geodesy, vol. 93, no. 9, pp. 1381–1398, Sept. 2019. DOI: https://doi.org/10.1007/s00190-019-01252-y
B. D. Tapley et al., "Contributions of GRACE to Understanding Climate Change," Nature Climate Change, vol. 9, no. 5, pp. 358–369, May 2019. DOI: https://doi.org/10.1038/s41558-019-0456-2
H. Save, S. Bettadpur, and B. D. Tapley, "High‐resolution CSR GRACE RL05 Mascons," Journal of Geophysical Research: Solid Earth, vol. 121, no. 10, pp. 7547–7569, Oct. 2016. DOI: https://doi.org/10.1002/2016JB013007
F. W. Landerer et al., "Extending the Global Mass Change Data Record: GRACE Follow‐On Instrument and Science Data Performance," Geophysical Research Letters, vol. 47, no. 12, June 2020, Art. no. e2020GL088306. DOI: https://doi.org/10.1029/2020GL088306
V. G. Ferreira et al., "Estimating Groundwater Recharge Across Africa During 2003–2023 Using GRACE-derived Groundwater Storage Changes," Journal of Hydrology: Regional Studies, vol. 56, Dec. 2024, Art. no. 102046. DOI: https://doi.org/10.1016/j.ejrh.2024.102046
S. Deng, Y. Liu, and W. Zhang, "A Comprehensive Evaluation of GRACE‐Like Terrestrial Water Storage (TWS) Reconstruction Products at an Interannual Scale During 1981–2019," Water Resources Research, vol. 59, no. 3, Mar. 2023, Art. no. e2022WR034381. DOI: https://doi.org/10.1029/2022WR034381
D. N. Wiese, F. W. Landerer, and M. M. Watkins, "Quantifying and Reducing Leakage Errors in the JPL RL05M GRACE Mascon Solution," Water Resources Research, vol. 52, no. 9, pp. 7490–7502, Sept. 2016. DOI: https://doi.org/10.1002/2016WR019344
P. Wang, S.-Y. Wang, J. Li, J. Chen, and Z. Qi, "Comparison of GRACE/GRACE-FO Spherical Harmonic and Mascon Products in Interpreting GNSS Vertical Loading Deformations over the Amazon Basin," Remote Sensing, vol. 15, no. 1, Jan. 2023, Art. no. 252. DOI: https://doi.org/10.3390/rs15010252
M. Zhang et al., "Evaluation of Terrestrial Water Storage Changes over China Based on GRACE Solutions and Water Balance Method," Sustainability, vol. 14, no. 18, Sept. 2022, Art. no. 11658. DOI: https://doi.org/10.3390/su141811658
M. Rodell et al., "The Global Land Data Assimilation System," Bulletin of the American Meteorological Society, vol. 85, no. 3, pp. 381–394, Mar. 2004. DOI: https://doi.org/10.1175/BAMS-85-3-381
L. V. Santarosa, G. V. F. Pinto, J. S. Blandón Luengas, and D. Gastmans, "Remote Sensing to Quantify Potential Aquifer Recharge as a Complementary Tool for Groundwater Monitoring," Hydrological Sciences Journal, vol. 69, no. 16, pp. 2455–2465, Dec. 2024. DOI: https://doi.org/10.1080/02626667.2024.2412741
Y. O. Ouma, D. O. Aballa, D. O. Marinda, R. Tateishi, and M. Hahn, "Use of GRACE Time-variable Data and GLDAS-LSM for Estimating Groundwater Storage Variability at Small Basin Scales: A Case Study of the Nzoia River Basin," International Journal of Remote Sensing, vol. 36, no. 22, pp. 5707–5736, Nov. 2015. DOI: https://doi.org/10.1080/01431161.2015.1104743
M. Rodell et al., "Emerging Trends in Global Freshwater Availability," Nature, vol. 557, no. 7707, pp. 651–659, May 2018. DOI: https://doi.org/10.1038/s41586-018-0123-1
B. R. Scanlon, L. Longuevergne, and D. Long, "Ground Referencing GRACE Satellite Estimates of Groundwater Storage Changes in the California Central Valley, USA," Water Resources Research, vol. 48, no. 4, Apr. 2012, Art. no. 2011WR011312. DOI: https://doi.org/10.1029/2011WR011312
N. Fei, Y. Gao, Z. Lu, and T. Xiang, "Z-Score Normalization, Hubness, and Few-Shot Learning," in 2021 IEEE/CVF International Conference on Computer Vision (ICCV), Montreal, QC, Canada, Oct. 2021, pp. 142–151. DOI: https://doi.org/10.1109/ICCV48922.2021.00021
M. E. Coffey, S. R. Workman, J. L. Taraba, and A. W. Fogle, "Statistical Procedures for Evaluating Daily and Monthly Hydrologic Model Predictions," Transactions of the ASAE, vol. 47, no. 1, pp. 59–68, 2004. DOI: https://doi.org/10.13031/2013.15870
F. Lin, X. Chen, and H. Yao, "Evaluating the Use of Nash-Sutcliffe Efficiency Coefficient in Goodness-of-Fit Measures for Daily Runoff Simulation with SWAT," Journal of Hydrologic Engineering, vol. 22, no. 11, Nov. 2017, Art. no. 05017023. DOI: https://doi.org/10.1061/(ASCE)HE.1943-5584.0001580
P. Sedgwick, "Pearson’s Correlation Coefficient," BMJ, vol. 345, no. jul04 1, pp. e4483–e4483, July 2012. DOI: https://doi.org/10.1136/bmj.e4483
M. Rodell, I. Velicogna, and J. S. Famiglietti, "Satellite-based Estimates of Groundwater Depletion in India," Nature, vol. 460, no. 7258, pp. 999–1002, Aug. 2009. DOI: https://doi.org/10.1038/nature08238
D. Long, B. R. Scanlon, L. Longuevergne, A. Y. Sun, D. N. Fernando, and H. Save, "GRACE Satellite Monitoring of Large Depletion in Water Storage in Response to the 2011 Drought in Texas," Geophysical Research Letters, vol. 40, no. 13, pp. 3395–3401, July 2013. DOI: https://doi.org/10.1002/grl.50655
D. D. Rowlands et al., "Global Mass Flux Solutions from GRACE: A Comparison of Parameter Estimation Strategies — Mass Concentrations Versus Stokes Coefficients," Journal of Geophysical Research: Solid Earth, vol. 115, no. B1, Jan. 2010, Art. no. 2009JB006546. DOI: https://doi.org/10.1029/2009JB006546
M. Ahmed, M. Sultan, J. Wahr, and E. Yan, "The Use of GRACE Data to Monitor Natural and Anthropogenic Induced Variations in Water Availability Across Africa," Earth-Science Reviews, vol. 136, pp. 289–300, Sept. 2014. DOI: https://doi.org/10.1016/j.earscirev.2014.05.009
P. Schober, C. Boer, and L. A. Schwarte, "Correlation Coefficients: Appropriate Use and Interpretation," Anesthesia & Analgesia, vol. 126, no. 5, pp. 1763–1768, May 2018. DOI: https://doi.org/10.1213/ANE.0000000000002864
P. Sedgwick, "Spearman’s Rank Correlation Coefficient," BMJ, Nov. 2014, Art. no. g7327. DOI: https://doi.org/10.1136/bmj.g7327
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