Harnessing Computer Vision and Deep Learning to Monitor Coral Reef Health

Authors

  • Afnan Aldhahri College of Computing, Software Engineering Department, Umm Al-Qura University, Saudi Arabia
  • Esra Saif College of Computing, Computer Science and Artificial Intelligence Department, Umm Al-Qura University, Saudi Arabia
  • Hanouf Ali College of Computing, Computer Science and Artificial Intelligence Department, Umm Al-Qura University, Saudi Arabia
  • Maha Alsayed College of Computing, Computer Science and Artificial Intelligence Department, Umm Al-Qura University, Saudi Arabia
  • Fatimah Alshareef College of Computing, Computer Science and Artificial Intelligence Department, Umm Al-Qura University, Saudi Arabia
Volume: 15 | Issue: 4 | Pages: 24523-24531 | August 2025 | https://doi.org/10.48084/etasr.10324

Abstract

Coral reefs have emerged as the most biodiverse and important entities in the marine ecosystem, as they house 25% of all marine organisms. As water temperatures rise in some sea areas, coral reef colors gradually turn white. This phenomenon, known as coral bleaching, signifies the deterioration of coral reef health and poses a significant threat to their survival. There is an urgent need for rapid and effective solutions to mitigate these threats, limit the spread of bleaching, and protect coral reefs. This study proposes a novel system that utilizes deep learning and computer vision to assess coral reef health and detect early signs of bleaching. Focusing on coral reefs in the Red Sea, the YOLOv8 and YOLOv9 object detection models were used on an augmented dataset of 10,285 labeled images representing healthy, bleached, and dead corals. The system includes a user-friendly interface for image classification and automatic notification of relevant authorities upon detection of bleaching or death. The evaluation results showed that YOLOv9 achieved a slightly higher mean Average Precision (mAP) of 89% compared to YOLOv8 (88%), demonstrating the effectiveness and potential of the system for real-time coral reef monitoring. This research offers a practical, automated solution for early detection, reducing human effort and achieving faster results, ultimately saving coral reefs from irreversible damage.

Keywords:

computer vision, deep learning, object detection, YOLO, coral reefs

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References

"Coral Reefs." https://mozambique.wcs.org/Wildlife/Coral-Reefs/gad_source/1/gclid/CjwKCAiAvdCrBhBREiwAX6-6Uhnv-gpQv74GwI-foj2HS0vVq7GJ-Hq3E8u0CYOtEooIk5o2J7rlexoC10kQAvD_BwE.aspx.

R. Van Woesik et al., "Coral‐bleaching responses to climate change across biological scales," Global Change Biology, vol. 28, no. 14, pp. 4229–4250, Jul. 2022. DOI: https://doi.org/10.1111/gcb.16192

S. Jamil, M. Rahman, and A. Haider, "Bag of Features (BoF) Based Deep Learning Framework for Bleached Corals Detection," Big Data and Cognitive Computing, vol. 5, no. 4, Oct. 2021, Art. no. 53. DOI: https://doi.org/10.3390/bdcc5040053

M. Fine et al., "Coral reefs of the Red Sea — Challenges and potential solutions," Regional Studies in Marine Science, vol. 25, Jan. 2019, Art. no. 100498. DOI: https://doi.org/10.1016/j.rsma.2018.100498

"الشعاب المرجانية." https://seos-project.eu/coralreefs/coralreefs-c04-p01.ar.html.

A. Bahrani, B. Majidi, and M. Eshghi, "Coral Reef Management in Persian Gulf Using Deep Convolutional Neural Networks," in 2019 4th International Conference on Pattern Recognition and Image Analysis (IPRIA), Tehran, Iran, Mar. 2019, pp. 200–204. DOI: https://doi.org/10.1109/PRIA.2019.8786005

S. F. Heron, J. A. Maynard, R. Van Hooidonk, and C. M. Eakin, "Warming Trends and Bleaching Stress of the World’s Coral Reefs 1985–2012," Scientific Reports, vol. 6, no. 1, Dec. 2016, Art. no. 38402. DOI: https://doi.org/10.1038/srep38402

T. P. Hughes et al., "Global warming and recurrent mass bleaching of corals," Nature, vol. 543, no. 7645, pp. 373–377, Mar. 2017.

T. M. DeCarlo, "The past century of coral bleaching in the Saudi Arabian central Red Sea," PeerJ, vol. 8, Oct. 2020, Art. no. e10200. DOI: https://doi.org/10.7717/peerj.10200

"Corals are threatened by global warming," The Economist. Accessed: May 28, 2025. [Online]. Available: https://www.economist.com/science-and-technology/2022/06/14/corals-are-threatened-by-global-warming

G. Marre, C. De Almeida Braga, D. Ienco, S. Luque, F. Holon, and J. Deter, "Deep convolutional neural networks to monitor coralligenous reefs: Operationalizing biodiversity and ecological assessment," Ecological Informatics, vol. 59, Sep. 2020, Art. no. 101110. DOI: https://doi.org/10.1016/j.ecoinf.2020.101110

A. Raphael, Z. Dubinsky, N. S. Netanyahu, and D. Iluz, "Deep Neural Network Analysis for Environmental Study of Coral Reefs in the Gulf of Eilat (Aqaba)," Big Data and Cognitive Computing, vol. 5, no. 2, Apr. 2021, Art. no. 19. DOI: https://doi.org/10.3390/bdcc5020019

A. Alshahrani, H. Ali, E. Saif, M. Alsayed, and F. Alshareef, "Classification of Coral Reef Species using Computer Vision and Deep Learning Techniques," Engineering, Technology & Applied Science Research, vol. 14, no. 5, pp. 16478–16485, Oct. 2024. DOI: https://doi.org/10.48084/etasr.8044

J. Van der Meer, "Predicting Coral Health from Sparsely Annotated Images and under Domain Shift," M.S. Thesis, École Polytechnique Fédérale de Lausanne, Switzerland, 2022.

M. Thamarai and S. P. Aruna, "Stressed Coral Reef Identification Using Deep Learning CNN Techniques," Journal of Electronic & Information Systems, vol. 5, no. 2, pp. 1–9, Sep. 2023. DOI: https://doi.org/10.30564/jeis.v5i2.5808

A. B. Giles, K. Ren, J. E. Davies, D. Abrego, and B. Kelaher, "Combining Drones and Deep Learning to Automate Coral Reef Assessment with RGB Imagery," Remote Sensing, vol. 15, no. 9, Jan. 2023, Art. no. 2238. DOI: https://doi.org/10.3390/rs15092238

Fawad, I. Ahmad, A. Ullah, and W. Choi, "Machine learning framework for precise localization of bleached corals using bag-of-hybrid visual feature classification," Scientific Reports, vol. 13, no. 1, Nov. 2023, Art. no. 19461. DOI: https://doi.org/10.1038/s41598-023-46971-7

N. Ani Brown Mary and D. Dharma, "A novel framework for real-time diseased coral reef image classification," Multimedia Tools and Applications, vol. 78, no. 9, pp. 11387–11425, May 2019. DOI: https://doi.org/10.1007/s11042-018-6673-2

R. Narayan and A. J. Pellicano, "Machine learning on crowd-sourced data to highlight coral disease," Journal of Emerging Investigators, 2021. DOI: https://doi.org/10.59720/20-127

S. K. S. Rajan and N. Damodaran, "MAFFN_YOLOv5: Multi-Scale Attention Feature Fusion Network on the YOLOv5 Model for the Health Detection of Coral-Reefs Using a Built-In Benchmark Dataset," Analytics, vol. 2, no. 1, pp. 77–104, Jan. 2023. DOI: https://doi.org/10.3390/analytics2010006

K. Liu, Q. Sun, D. Sun, L. Peng, M. Yang, and N. Wang, "Underwater Target Detection Based on Improved YOLOv7," Journal of Marine Science and Engineering, vol. 11, no. 3, Mar. 2023, Art. no. 677. DOI: https://doi.org/10.3390/jmse11030677

E. Li, Q. Wang, J. Zhang, W. Zhang, H. Mo, and Y. Wu, "Fish Detection under Occlusion Using Modified You Only Look Once v8 Integrating Real-Time Detection Transformer Features," Applied Sciences, vol. 13, no. 23, Nov. 2023, Art. no. 12645. DOI: https://doi.org/10.3390/app132312645

D. Hindarto, "Exploring YOLOv8 Pretrain for Real-Time Detection of Indonesian Native Fish Species," Sinkron, vol. 8, no. 4, pp. 2776–2785, Oct. 2023. DOI: https://doi.org/10.33395/sinkron.v8i4.13100

"Augmented Marjan Dataset." Roboflow, [Online]. Available: https://universe.roboflow.com/maha-bil6y/marjan-detection/dataset/3.

"NOAA_ESD_Coral_Bleaching_Classifier - Browse Images | CoralNet." https://coralnet.ucsd.edu/source/2947/browse/images/.

"The Ocean Agency - Coral Reefs." https://theoceanagency.org/.

"Healthy and Bleached Corals Image Classification." Kaggle, [Online]. Available: https://www.kaggle.com/datasets/vencerlanz09/healthy-and-bleached-corals-image-classification.

"coral > Browse," Roboflow. https://universe.roboflow.com/thesis-fcq63/classification-of-corals/browse?queryText=&pageSize=50&startingIndex=100&browseQuery=true.

"coral > Browse," Roboflow. https://universe.roboflow.com/strkumar/coral-z3riv/browse?queryText=&pageSize=50&startingIndex=50&browseQuery=true.

"Roboflow: Computer vision tools for developers and enterprises." https://roboflow.com/.

H. Vedoveli, "Metrics Matter: A Deep Dive into Object Detection Evaluation," Medium, Sep. 15, 2023. https://medium.com/

@henriquevedoveli/metrics-matter-a-deep-dive-into-object-detection-evaluation-ef01385ec62.

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How to Cite

[1]
A. Aldhahri, E. Saif, H. Ali, M. Alsayed, and F. Alshareef, “Harnessing Computer Vision and Deep Learning to Monitor Coral Reef Health”, Eng. Technol. Appl. Sci. Res., vol. 15, no. 4, pp. 24523–24531, Aug. 2025.

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